A flashing check engine light signifies something serious is going on either internally or emission wise, but a DTC code hasn't been figured out. Once the PCM figures out what is out of range, a DTC will set itself. A miss misfire every X revolutions will only cause the CEL to remain lit.
A constant misfire will cause the CEL to blink, meaning the cylinder is not firing at all and allowing too much raw fuel to enter the cat. It's advised to not run the engine if the CEL is flashing to prevent damage to the emission system. I tinkered for a week swapping coils and plugs and tightening the intake manifold bolts seeing if that solved the misfire. That Friday it went in since I didn't have the time or appropriate tools to dig further.
If those are the intervals of your DTC's then it's probably not as serious a mine was right now, but even so a misfire isn't something that should be let go for an extended period no matter what. You have a thread started on your misfire already don't you?